Index

_

__del__() (obr.core.core.DelinkFolder method) (obr.core.core.TemporaryFolder method) __repr__() (obr.core.queries.Query method) (obr.core.queries.query_result method)

__version__ (in module obr) _exec_operation (obr.OpenFOAM.BlockMesh.OpenFOAMCase attribute) _exec_operation() (obr.OpenFOAM.case.OpenFOAMCase method) _link_path() (in module obr.signac_wrapper.operations)

A

add_includes() (in module obr.core.parse_yaml) add_variations() (in module obr.create_tree) allClean() (in module obr.signac_wrapper.operations)

apply() (in module obr.cli) (in module obr.signac_wrapper.operations) archive() (in module obr.cli) (in module obr.signac_wrapper.operations)

B

basic_eligible() (in module obr.signac_wrapper.operations) BlockMesh (class in obr.OpenFOAM.BlockMesh) blockMesh() (in module obr.signac_wrapper.operations) (obr.OpenFOAM.BlockMesh.BlockMesh method)

blockMeshDict (obr.OpenFOAM.BlockMesh.BlockMesh property) blockMeshDictmd5sum() (obr.OpenFOAM.BlockMesh.BlockMesh method) build_filter_query() (in module obr.core.queries)

C

calculate_simple_partition() (in module obr.OpenFOAM.BlockMesh) CaseOnDisk (class in obr.core.caseOrigins) check_cli_operations() (in module obr.cli_util) checkMesh() (in module obr.signac_wrapper.operations) (obr.OpenFOAM.BlockMesh.BlockMesh method) clean_path() (in module obr.create_tree) cli() (in module obr.cli) cli_cmd_setup() (in module obr.cli_util) common_params() (in module obr.cli) config_file_tree (obr.OpenFOAM.case.OpenFOAMCase property)

config_files_in_folder() (obr.OpenFOAM.case.OpenFOAMCase method) const_polyMesh_folder (obr.OpenFOAM.case.OpenFOAMCase property) constant_folder (obr.OpenFOAM.BlockMesh.OpenFOAMCase attribute) (obr.OpenFOAM.case.OpenFOAMCase property) controlDict (obr.OpenFOAM.BlockMesh.OpenFOAMCase attribute) controlDict() (in module obr.signac_wrapper.operations) copy_on_uses() (in module obr.signac_wrapper.operations) copy_to_archive() (in module obr.cli_util) create_tree() (in module obr.create_tree) current_time (obr.OpenFOAM.case.OpenFOAMCase property)

D

decomposePar() (in module obr.signac_wrapper.operations) (obr.OpenFOAM.case.OpenFOAMCase method) DelinkFolder (class in obr.core.core)

detailed_update() (obr.OpenFOAM.case.OpenFOAMCase method) dirty() (in module obr.signac_wrapper.labels) dispatch_post_hooks() (in module obr.signac_wrapper.operations) dispatch_pre_hooks() (in module obr.signac_wrapper.operations)

E

end_job_state() (in module obr.signac_wrapper.operations) eq (obr.core.queries.Predicates attribute) esi_version (obr.OpenFOAM.case.OpenFOAMCase property) eval_generator_expressions() (in module obr.core.parse_yaml) execute() (obr.core.queries.Query method) execute_operation() (in module obr.signac_wrapper.operations)

execute_post_build() (in module obr.signac_wrapper.operations) execute_pre_build() (in module obr.signac_wrapper.operations) execute_query() (in module obr.core.queries) execute_shell() (in module obr.core.core) expand_generator_block() (in module obr.create_tree) extract_from_operation() (in module obr.create_tree)

F

failed_op() (in module obr.signac_wrapper.labels) failure() (in module obr.signac_wrapper.labels) fetch_latest_log() (obr.OpenFOAM.case.OpenFOAMCase method) fetch_logs() (obr.OpenFOAM.case.OpenFOAMCase method) fetchCase() (in module obr.signac_wrapper.operations) File (class in obr.OpenFOAM.case) filter_jobs() (in module obr.core.queries) (obr.signac_wrapper.operations.OpenFOAMProject method) filtered_jobs (obr.signac_wrapper.operations.OpenFOAMProject attribute)

final() (in module obr.signac_wrapper.labels) find_solver_logs() (in module obr.core.core) find_time_folder() (in module obr.core.core) finished (obr.OpenFOAM.case.OpenFOAMCase property) finished() (in module obr.signac_wrapper.labels) flatten() (in module obr.create_tree) flatten_jobs() (in module obr.core.queries) fvSchemes() (in module obr.signac_wrapper.operations) fvSolution() (in module obr.signac_wrapper.operations)

G

generate (in module obr.signac_wrapper.operations) generate_view() (in module obr.create_tree) geq (obr.core.queries.Predicates attribute) get() (obr.OpenFOAM.case.File method) (obr.OpenFOAM.case.OpenFOAMCase method) get_args() (in module obr.signac_wrapper.operations) get_latest_log() (in module obr.core.core) get_mesh_stats() (in module obr.core.core)

get_number_of_procs() (in module obr.signac_wrapper.operations) get_path_from() (in module obr.create_tree) get_timestamp_from_log() (in module obr.core.core) get_values() (in module obr.signac_wrapper.operations) GitRepo (class in obr.core.caseOrigins) GLOBAL_INIT_COUNT (in module obr.core.core) GLOBAL_UNINIT_COUNT (in module obr.core.core) group_jobs() (obr.signac_wrapper.operations.OpenFOAMProject method) gt (obr.core.queries.Predicates attribute)

H

has_mesh() (in module obr.signac_wrapper.operations)

has_openfoam_header() (obr.OpenFOAM.case.OpenFOAMCase method)

I

id (obr.core.queries.query_result attribute) init() (in module obr.cli) (obr.core.caseOrigins.CaseOnDisk method) (obr.core.caseOrigins.GitRepo method) (obr.core.caseOrigins.MultiCase method) init_p (obr.OpenFOAM.case.OpenFOAMCase property) init_U (obr.OpenFOAM.case.OpenFOAMCase property) initialConditions() (in module obr.signac_wrapper.operations) initialize_if_required() (in module obr.signac_wrapper.operations) input_to_queries() (in module obr.core.queries)

input_to_query() (in module obr.core.queries) instantiate_origin_class() (in module obr.core.caseOrigins) is_case() (in module obr.signac_wrapper.operations) is_decomposed (obr.OpenFOAM.case.OpenFOAMCase property) is_file_modified() (obr.OpenFOAM.case.OpenFOAMCase method) is_job() (in module obr.signac_wrapper.operations) is_locked() (in module obr.signac_wrapper.operations) is_modified() (obr.OpenFOAM.case.File method) is_on_requested_parent() (in module obr.create_tree) is_tree_modified() (obr.OpenFOAM.case.OpenFOAMCase method) is_valid_workspace() (in module obr.cli_util)

K

key (obr.core.queries.Query attribute)

key_to_path() (in module obr.core.core)

L

latest_log (obr.OpenFOAM.case.OpenFOAMCase property) latest_log_path_ (obr.OpenFOAM.case.OpenFOAMCase attribute) latest_solver_log_path (obr.OpenFOAM.case.OpenFOAMCase property) leq (obr.core.queries.Predicates attribute) link_folder_to_copy() (in module obr.core.core) logged_execute() (in module obr.core.core) logged_func() (in module obr.core.core)

logger (in module obr.cli_util) (in module obr.core.caseOrigins) (in module obr.core.core) (in module obr.core.logger_setup) (in module obr.core.queries) (in module obr.OpenFOAM.case) (in module obr.signac_wrapper.operations) lt (obr.core.queries.Predicates attribute)

M

main() (in module obr.cli) map_view_folder_to_job_id() (in module obr.core.core) match() (obr.core.queries.Query method) md5sum() (obr.OpenFOAM.case.File method) merge_job_documents() (in module obr.core.core) modifies_file() (in module obr.core.core) modifyBlockMesh() (obr.OpenFOAM.BlockMesh.BlockMesh method) module obr obr.__main__ obr.cli obr.cli_util obr.core obr.core.caseOrigins obr.core.core obr.core.logger_setup obr.core.parse_yaml obr.core.queries obr.create_tree obr.OpenFOAM obr.OpenFOAM.BlockMesh obr.OpenFOAM.case obr.OpenFOAM.solver obr.signac_wrapper obr.signac_wrapper.labels obr.signac_wrapper.operations obr.signac_wrapper.submit

MultiCase (class in obr.core.caseOrigins) MultiCase() (in module obr.signac_wrapper.operations)

N

needs_initialization() (in module obr.signac_wrapper.operations)

negate (obr.core.queries.Query attribute) neq (obr.core.queries.Predicates attribute)

O

obr module obr.__main__ module obr.cli module obr.cli_util module obr.core module obr.core.caseOrigins module obr.core.core module obr.core.logger_setup module obr.core.parse_yaml module obr.core.queries module obr.create_tree module obr.OpenFOAM module

obr.OpenFOAM.BlockMesh module obr.OpenFOAM.case module obr.OpenFOAM.solver module obr.signac_wrapper module obr.signac_wrapper.labels module obr.signac_wrapper.operations module obr.signac_wrapper.submit module OF_HEADER_REGEX (in module obr.OpenFOAM.case) OpenFOAMCase (class in obr.OpenFOAM.BlockMesh) (class in obr.OpenFOAM.case) OpenFOAMProject (class in obr.signac_wrapper.operations) OpenFOAMTutorialCase (class in obr.core.caseOrigins) operation_complete() (in module obr.signac_wrapper.operations) owns_mesh() (in module obr.signac_wrapper.labels) owns_procs() (in module obr.signac_wrapper.labels)

P

parent_job_is_ready() (in module obr.signac_wrapper.operations) parse_queries() (in module obr.core.parse_yaml) parse_special_variables() (in module obr.core.parse_yaml) parse_variables() (in module obr.core.core) parse_variables_impl() (in module obr.core.core) path (obr.OpenFOAM.case.OpenFOAMCase property) path_to_key() (in module obr.core.core) PATH_TOKEN (in module obr.core.core) perform_post_md5sum_calculations() (obr.OpenFOAM.case.OpenFOAMCase method)

polyMesh (obr.OpenFOAM.BlockMesh.BlockMesh property) postProcess() (in module obr.cli) predicate (obr.core.queries.Query attribute) Predicates (class in obr.core.queries) print_operations() (obr.signac_wrapper.operations.OpenFOAMProject method) process_latest_time_stats() (obr.OpenFOAM.case.OpenFOAMCase method) processing() (in module obr.signac_wrapper.labels) processor_folder (obr.OpenFOAM.case.OpenFOAMCase property) profile_call() (in module obr.core.core) progress (obr.OpenFOAM.case.OpenFOAMCase property)

Q

Query (class in obr.core.queries) query() (in module obr.cli) (obr.signac_wrapper.operations.OpenFOAMProject method) query_flat_jobs() (in module obr.core.queries) query_impl() (in module obr.cli_util) (in module obr.core.queries)

query_result (class in obr.core.queries) query_to_dataframe() (in module obr.core.queries) query_to_dict() (in module obr.core.queries) query_to_records() (in module obr.core.queries)

R

read_yaml() (in module obr.core.parse_yaml) ready() (in module obr.signac_wrapper.labels) refineMesh() (in module obr.signac_wrapper.operations) (obr.OpenFOAM.BlockMesh.BlockMesh method) remove_solver_logs() (obr.OpenFOAM.case.OpenFOAMCase method) replaceMesh() (in module obr.signac_wrapper.operations) (obr.OpenFOAM.case.OpenFOAMCase method) reset() (in module obr.cli) reset_case() (obr.OpenFOAM.case.OpenFOAMCase method)

reset_workspace() (in module obr.cli) resetCase() (in module obr.signac_wrapper.operations) resolve_of_path() (obr.core.caseOrigins.OpenFOAMTutorialCase method) result (obr.core.queries.query_result attribute) run() (in module obr.cli) (obr.OpenFOAM.case.OpenFOAMCase method) run_cmd_builder() (in module obr.signac_wrapper.operations) runParallelSolver() (in module obr.signac_wrapper.operations) runSerialSolver() (in module obr.signac_wrapper.operations)

S

sed() (in module obr.OpenFOAM.BlockMesh) set() (obr.OpenFOAM.case.File method) set_cells() (in module obr.OpenFOAM.BlockMesh) set_entrypoint() (obr.signac_wrapper.operations.OpenFOAMProject method) set_failure() (in module obr.signac_wrapper.operations) setKeyValuePair() (in module obr.signac_wrapper.operations) (obr.OpenFOAM.case.OpenFOAMCase method) setup_job_doc() (in module obr.create_tree) setup_logging() (in module obr.core.logger_setup) shell() (in module obr.signac_wrapper.operations) SIGNAC_PATH_TOKEN (in module obr.core.core) simulate (in module obr.signac_wrapper.operations) solver (obr.OpenFOAM.case.OpenFOAMCase property)

start_job_state() (in module obr.signac_wrapper.operations) state (obr.core.queries.Query attribute) statepoint_get() (in module obr.core.queries) statepoint_query() (in module obr.core.queries) status() (in module obr.cli) sub_keys (obr.core.queries.Query attribute) (obr.core.queries.query_result attribute) submit() (in module obr.cli) submit_impl() (in module obr.signac_wrapper.submit) success() (in module obr.core.logger_setup) SUCCESS_LEVELV_NUM (in module obr.core.logger_setup) system_folder (obr.OpenFOAM.BlockMesh.OpenFOAMCase attribute) (obr.OpenFOAM.case.OpenFOAMCase property) system_include_folder (obr.OpenFOAM.case.OpenFOAMCase property)

T

tear_down() (obr.core.core.DelinkFolder method) TemporaryFolder (class in obr.core.core) time_folder (obr.OpenFOAM.case.OpenFOAMCase property)

to_dict() (in module obr.create_tree) transportProperties() (in module obr.signac_wrapper.operations) turbulenceProperties() (in module obr.signac_wrapper.operations)

U

uninitialised() (in module obr.signac_wrapper.labels)

V

validate_state_impl() (in module obr.signac_wrapper.operations)

validateState() (in module obr.signac_wrapper.operations) value (obr.core.queries.Query attribute)

W

was_successful() (obr.OpenFOAM.case.OpenFOAMCase method)

writes_files() (in module obr.core.core)

Z

zero_folder (obr.OpenFOAM.case.OpenFOAMCase property)